Bioinformatics Methods and Resources

In this episode, Brian Corrie joins us to discuss iReceptor and the Type 1 Diabetes AIRR Consortium.

#type1diabetes #t1d #thinktank #diabetes #diabetesresearch #research #novel #type1diabetesresearch #ireceptor #tcr #bcr #receptor #tcell #bcell #vdj #consortium #AIRR #repertoire #AdaptiveImmuneReceptorRepertoire #adaptiveimmunity

In this episode, Paul Thomas discusses T cell receptor pipelines for type 1 diabetes.

#asktheexpert #ATE #type1diabetes #t1d #t1dresearch #diabetesresearch #novel #diabetes #autoimmune #autoimmunediabetes #tcrbeta #tcr #tcellreceptor #tcells #repertoire #TCR #pipeline

One hour panel discussion of new tool:
HumanIslets: An integrated platform for human islet data access and analysis

Included the following scientists:
Jessica Ewald, PhD
Patrick MacDonald, PhD

In this episode, Sergei Pustylnikov discusses autoimmunity applications of a new efficient method for generating the data on T cell antigen specificity and corresponding TCRs.

#TCR #tcellreceptor #tcell #Tcellantigen #antigen #100xbio #efficientmethod #data #autoimmunity #novel #asktheexpert #ATE #T1D #type1diabetes #science

Dr. Klaus Kaestner joins us to discuss the Human Pancreas Analysis Program and enabling new insights into type 1 diabetes.


#HPAP #pancreas #pancreatic #analysis #type1diabetes #upenn

Exploring the Genetics of Type 1 Diabetes through GWAS, eQTLs, Chromatin Looping and the 2021 DChallenge

Bootcamps are engaging and comprehensive webinars covering a range of topics focused on how to use dkNET tools.

Dr. James Heather joins us to discuss Stitchr, a tool for making and modifying T cell receptor sequences.

Ask the Expert is a ~30 minute digital cafe experience where scientists and grad students can meet and exchange with thought leaders in the field of type 1 diabetes. Link below to sign up for a seat in the cafe!

https://thesugarscience.org/ask-the-expert/

PhD students Milena Pavlovic and Lonneke Scheffer from the University of Oslo join us to discuss immuneML, "an open-source ecosystem for machine learning analysis of adaptive immune receptor repertoires".

Click here for the immuneML website to learn more: https://immuneml.uio.no/

Link to the published paper:
https://www.nature.com/articles/s42256-021-00413-z

Dr. Milena Pavlovic and Dr. Lenneke Schieffer join us to discuss Immune ML, an "open-source ecosystem for machine learning analysis of adaptive immune receptor repertoires.

Immune ML Website: https://immuneml.uio.no/

Ask the Expert is a ~30 minute digital cafe experience where scientists and grad students can meet and exchange with thought leaders in the field of type 1 diabetes. Link below to sign up for a seat in the cafe!

https://thesugarscience.org/ask-the-expert/

Bootcamps are engaging and comprehensive webinars covering a range of topics focused on how to use dkNET tools.

dkNET Academy is a collaboration between dkNET.org and thesugarscience.org which will provide engaging content and training on the vast collection of dkNET tools.

dkNET is a search portal that helps scientists find resources relevant to their research. The site is rigorously updated with tools and services that will support robust and reproducible science, all while helping users stay up to date and compliant with fast approaching FAIR data and NIH open science mandates.